Cloud-Hosted Data Sets

The ISB-CGC platform hosts the majority of the TCGA data set as well as other reference and annotation datasets in different appropriate Google Cloud technologies:

• low-level DNA- and RNA-Seq data are stored primarily in Google Cloud Storage;
• some open-access CCLE sequence data is also available in Google Genomics, where it can be queried using the GA4GH API;
• high-level clinical, biospecimen, and molecular data are available in a series of carefully curated datasets and tables backed by the massively-parallel analytics engine Google BigQuery;
• TCGA radiology and tissue image data are now also available in Google Cloud Storage;
• TCGA proteomics (CPTAC PhaseII) data has also been uploaded to Google Cloud Storage;

The original mission of the ISB-CGC was to host the TCGA dataset. We are now in midst of adding data from the TARGET pediatric cancer. Stay tuned for updates.

• NCI Cancer Programs
  • TCGA Overview
  • TARGET Overview
  • CCLE Overview
  • CGCI Overview
• NCI-GDC Overview
• ISB-CGC Hosted Data Sets
  • Data in BigQuery
  • Data in Cloud Storage
  • Data in Google Genomics
• Reference Data
  • ISB-CGC Hosted Reference Data
  • Other Reference Data Sources
• Data Releases and Future Plans
  • Release Notes
  • Future Plans

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Have feedback or corrections? You can file an issue here or email us at feedback@isb-cgc.org.